Trusted by Accounting and Finance Teams.
Two Ways to Sync Shopify with QuickBooks That Fits Your Business
Choose the sync method that works best for your workflow
Summarised Sync to QuickBooks Journal Entries
Consolidate sales, refunds, taxes, balances, and COGS into clean journal entries instead of cluttering QuickBooks with thousands of individual transactions.
Individual Transaction Sync to QuickBooks
Sync every Shopify order, payment, product, customer, refund, fee, and COGS individually into QuickBooks Online with perfect one-to-one accuracy.
Shopify accounting, stress free!
Comprehensive dashboard with real-time insights into your entire e-commerce operation
Auto-Categorize by Country and State
SyncTools automatically categorizes income and expenses by country and state, giving you highly accurate, detailed financial reports in QuickBooks Online.
- Simplify multi-region and multi-state accounting
- Gain deeper insights into profits and taxes by location
- Save hours on manual categorization and reporting
Know Which Products Drive Revenue
Organize income and expenses by product category to understand which items drive your revenue and keep your books structured in QuickBooks.
- Understand your top performing categories
- Organize books by product type, category, tags, or collections
- Easily create custom categories to suit your needs
Track Revenue by Sales Channel
Track income and expenses by Shopify sales channels and see a clear breakdown of where your revenue is coming from, all in one place.
- See performance across POS, Online Store, Meta, YouTube and more
- Accurately track sales, fees, and refunds per channel
- Get channel-level visibility inside QuickBooks
Effortless Reconciliation, Maximum Accuracy
SyncTools automatically matches Shopify payout deposits with your bank statements, eliminating manual work and reconciliation errors.
- 100% accurate matching of payouts and deposits
- Save hours on manual reconciliation
- Ensure error-free, clean financial records
Know Your True Profit
SyncTools consolidates sales, refunds, shipping costs, and inventory valuations to give you a clear picture of your true net profit with accurate COGS data.
- Sync all revenue and expense details seamlessly
- Track inventory value for accurate calculations
- Calculate true net profits with precise COGS data
Set up in just 3 easy steps
Get started in minutes with our simple setup process
Connect Your Accounts
Link your Shopify store and QuickBooks account with secure OAuth authentication in under 2 minutes.
Configure Settings
Choose your sync preferences, mapping rules, and automation settings with our guided setup wizard.
Start Syncing
Activate the integration and watch your data sync automatically in real-time. That's it!
How SyncTools elevates Shopify Commerce?
Powerful automation features designed for modern e-commerce businesses
Smart Reconciliation
AI-powered matching automatically reconciles transactions, saving hours of manual work every week.
Multi-Store Support
Connect multiple Shopify stores to a single QuickBooks account with separate tracking for each location.
Advanced Reports
Generate comprehensive financial reports with real-time insights into sales, expenses, and profitability.
Bank-Level Security
SOC 2 Type II certified with 256-bit encryption ensuring your financial data stays protected.
Manage your bookkeeping effortlessly
Choose the plan that fits your business needs
Starter
Perfect for small businesses
- Up to 500 orders/month
- Real-time sync
- Basic reporting
- Email support
- Standard security
Professional
For growing businesses
- Up to 5,000 orders/month
- Real-time sync
- Advanced reporting
- Priority support
- Custom field mapping
- Multi-store support
Enterprise
For high-volume stores
- Unlimited orders
- Real-time sync
- Custom integrations
- Dedicated account manager
- Advanced security
- SLA guarantee
- White-label options
Compare Plans and Features
See which plan includes the features you need
Trusted by Teams Worldwide
Thousands of accounting firms and finance teams rely on SyncTools to streamline reconciliation and save hours every month.
Customers who are Trusting Us
Haider Ali
Business Owner
"Excellent app. Very easy to work with. Very knowledgeable, understanding, and open to any requests."
Tom Brookes
Finance Director
"Best in class. If you use Linnworks and Xero, SyncTools is a phenomenal tool, far superior to any alternative we've tried."
Deborah Whitfield
Customer
"I recently installed SyncTools and it is easy to use. The team worked quickly, kept me informed, and now everything runs smoothly."
Heather Cook
Customer
"Best Xero connector on the market. Excellent customer support and continuous development from an app that does exactly what it says."
Harvey Uppal
Customer
"AWESOME: Excellent tool and has saved us so much time. Credit to the support team for being so helpful in setup and post-setup."
Geoff Ainsworth
Customer
"Excellent tool: Does what it says and connects seamlessly & if you have any issues the support is amazing!"
Nirav Khiroya
Customer
"Fantastic support: The team has always been diligent and proactive about fixing any bugs that arise. Would highly recommend them."
Robert Morris
Customer
"Have been using the Linnworks Xero connector for a couple of years now. It is very reliable and the developers are keen to improve it."
Connie Sturman
Customer
"I just looked in the connector and it looks like they were able to get the purchase orders synced... thank the team for us. Thank you for your help."
Frequently asked questions
Everything you need to know about the integration
How long does it take to set up the integration?
Most users complete the setup in under 10 minutes. Simply connect your Shopify and QuickBooks accounts, configure your preferences, and you're ready to go. Our guided setup wizard walks you through each step.
Will historical data be synced?
Yes, you can choose to sync historical data from your Shopify store when you first connect. You can select the date range you want to import, making it easy to migrate from manual processes.
How often does data sync?
Data syncs in real-time as transactions occur. You can also configure scheduled syncs or trigger manual syncs at any time from the dashboard. All data is validated before syncing to ensure accuracy.
What happens if there's a sync error?
Our system automatically detects and alerts you of any sync errors. You'll receive notifications and can resolve issues directly from the dashboard with guided troubleshooting. Our support team is also available to help.
Can I customize which data gets synced?
Absolutely. You have full control over field mapping, sync filters, and automation rules. Our custom mapping feature lets you tailor the integration to your exact workflow and business requirements.
Is my data secure?
Yes. We use bank-level 256-bit SSL encryption and are SOC 2 Type II certified. Your data is encrypted both in transit and at rest. We never store your credentials and undergo regular security audits.
Do you support multiple Shopify stores?
Yes, the Professional and Enterprise plans support multiple Shopify stores. Each store can have its own sync settings and mapping rules while feeding into a single QuickBooks account.
What about fees and discounts?
SyncTools automatically tracks all transaction fees (Shopify, Stripe, PayPal), shipping costs, discounts, and refunds. These are properly categorized in QuickBooks for accurate profit calculations.