Integration Guide
Shopify Dynamics 365 Business Central Connector
Connect Synctools with Shopify and Dynamics 365 Business Central integration to sync Shopify customers, products, and deals into Dynamics Business Central. The sync turns your store data into powerful sales. Get SyncTools now and simplify your accounting processes!
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Effortlessly streamline Shopify To Dynamic 365 Business Central accounting!
TL;DR: SyncTools connects Shopify to Dynamics 365 Business Central — mapping gross sales, payment fees, refunds, shipping, and taxes to the correct G/L accounts, VAT posting groups, and dimensions automatically. Individual or summarized journal entry sync supported. Free 30-day trial; sandbox testing available.
- Manage sales, purchases, refunds, expenses, fees, taxes & COGS.
- Categorize your shopify sales at a granular level with channel-wise orders sync selection.
- Accelerate your accounting with the best Shopify-Dynamic 365 Business Central integration.
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Shopify-Dynamic 365 Business Central Integration
Sync shopify transactions to Dynamic 365 Business Central
With SyncTools, you can sync all important transaction details such as shopify sales, fees, discounts, shipping, and tax.
This integration also enables you to sync purchase orders, refunds & summarized sales with product mapping to generate accurate P&L and balance sheet reports without any hassle.
Individual/Summarized sales sync
This allows merchants to sync sales data to Dynamic 365 Business Central at a granular level, either individually or in summarized form.
This helps you with the flexibility to choose how your sales data is synced to Dynamic 365 Business Central, enabling you to customize your financial reporting and analysis.
Track COGS and other metrics across all shopify stores
By syncing COGS data from Shopify to Dynamic 365 Business Central Integration, you can keep track of the cost of each product sold accurately.
This helps you make informed business decisions about pricing, inventory, and profit margins. And helps you generate accurate financial reports that reflect your true profitability.
Advance - Tax setting rules
Easily schedule your taxes for USA, UK & different markets easily with tax-setting rules based on country & region wise, source/subsource & other possible tax rates.
Real-Time data sync
With this connector, you can sync shopify data in real-time with Dynamic 365 Business Central, ensuring that your accounting records are always up-to-date. This means you can access the latest financial data and make informed business decisions based on accurate and current information.
Synchronize the payment entry to Dynamic 365 Business Central
SyncTools helps you synchronize the payment entry to Dynamic 365 Business Central when an order is paid in shopify.
Why choose SyncTools?
Increased efficiency
With the ability to sync sales, purchase, refunds, summarized sales, and COGS (Cost of Goods Sold), your business can streamline its financial operations and reduce the time and effort required for manual data entry and reconciliation.
Improved accuracy
Manual data entry can result in errors, which can have significant financial consequences. By automating the process with your shopify QBO integration product, you can improve the accuracy of your financial data and reduce the risk of errors.
Better financial insights
With your product’s capability to sync and summarize sales and COGS, you can gain a clearer understanding of your business’s financial performance and make data-driven decisions that can help drive growth.
Time and cost savings
Automating the Shopify and Oracle NetSuite integration can save your business time and money by reducing the need for manual data entry and reconciliation. This can also free up your team’s time to focus on other important tasks.
Manage your bookkeeping effortlessly
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MonthlyYearlySave 12%
Free(Life-Time)
$0$0
USD/Month
USD/Year
-
Upto **200 transactions/month**
[Start free trial](https://app.synctools.ai/on-boarding)
Lite
$19
$200
USD/Month
USD/Year
-
Upto **200 transactions/month**
[Start free trial](https://app.synctools.ai/on-boarding)
Basic
$39
$412
USD/Month
USD/Year
-
Upto **500 transactions/month**
[Start free trial](https://app.synctools.ai/on-boarding)
MOST POPULAR
Standard
$59
$623
USD/Month
USD/Year
-
Upto **2000 transactions/month**
[Start free trial](https://app.synctools.ai/on-boarding)
Plus
$89
$940
USD/Month
USD/Year
-
Upto **5000 transactions/month**
[Start free trial](https://app.synctools.ai/on-boarding)
Add Ons
$ 5 per 100 additional transactions (for all plans)
$ 20 per business entity/months
More than 5000 orders?
[Contact sales!](mailto:sales@synctools.ai)
Compare plans and features
Usage
Free (Life-Time)
Lite
Basic
Standard
Plus
Monthly
$0 USD/Month
$19 USD/Month
$39 USD/Month
$59 USD/Month
$89 USD/Month
Yearly
$0 USD/Year
$200 USD/Year
$412 USD/Year
$623 USD/Year
$940 USD/Year
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Limits
Monthly Order Volume
Upto 200 transactions/month
Upto 200 transactions/monthy
Upto 500 transactions/month
Upto 2000 transactions/month
5000 transactions/month
Access to Historical Data
3 Months history
3 Months history
6 Months history
12 Months history
12 Months history
Supported Shopify Store
1 Store
1 Store
2 Stores
5 Stores
5 Stores
Dynamics 365 Business Central
1
1
2
3
3
Additional Users Accounts
1
2
3
Unlimited
Unlimited
+
Features
Class and Location Mapping
COGS Synchronization
Monthly
Daily and monthly both
Daily and monthly both
Daily and monthly both
Tax Synchronization
Gift Card Synchronization
Default
Default
Default
Default
Default
+
Sales Data Grouping
By Payment Gateway
By Country
By Sales Channel
By Product Category
By Province/State
+
Summarized Sync
Mode
Manual
Manual & Auto
Manual & Auto
Manual & Auto
Manual & Auto
Frequency
Monthly
Daily, Weekly, Monthly
Daily, Weekly, Monthly
Daily, Weekly, Monthly
Daily, Weekly, Monthly
Send Sync Report via mail
Daily
Daily
Daily
Daily
Tax Threshold Notifications
Financial Summary by SyncTools
+
Individual Sync
Product, Customer, Sales
Tax, Refunds, Tips, COGS, Gift card
Categorisation based on Sales Channel
Payout and Fees
+
Other
Custom Development Services
Support
Email support, FAQs
Email support, FAQs
Phone Call, email support, FAQs
Phone Call, Zoom meeting, email support, FAQs
Phone Call, Zoom meeting, email support, FAQs
Want custom implementation in SyncTools-
Shopify Dynamic 365 Business Central connector?
Let us know what you’re looking for, and we will get it up and running.
[Contact sales!](mailto:sales@synctools.ai)
How to Connect Shopify to Dynamics 365 Business Central in 5 Steps
Connecting Shopify to Dynamics 365 Business Central with SyncTools takes under 20 minutes and requires no developer access.
Step 1 — Install SyncTools from the Shopify App Store Go to your Shopify admin > Apps > Shopify App Store, search for SyncTools, and install it. Approve the required permissions so SyncTools can read your Shopify orders, payouts, and transaction data.
Step 2 — Connect your Dynamics 365 Business Central account In SyncTools, navigate to Accounting System and select Dynamics 365 Business Central. Authorise SyncTools via the Microsoft OAuth flow. SyncTools reads your chart of accounts, dimensions, and posting groups.
Step 3 — Map Shopify transaction types to Dynamics 365 accounts Assign each Shopify transaction type to the correct Dynamics 365 account: gross sales → Sales Revenue, Shopify Payments fees → Payment Processing Fees, refunds → Sales Returns, taxes → Sales Tax Payable, and Shopify payouts → the designated clearing account. SyncTools pre-fills a recommended mapping.
Step 4 — Choose summarized or individual sync mode Select summarized sync (daily journal entries — ideal for high-volume stores) or individual sync (one record per order — best for detailed reporting). Both modes produce a bank deposit that reconciles in one click.
Step 5 — Run your first sync and verify in Dynamics 365 Click Sync Now. Shopify transaction data posts to Dynamics 365 Business Central automatically. Check the SyncTools sync log for any errors, then verify that the posted entries appear correctly in Dynamics 365 Business Central with the right account mapping.
Further Reading
- Shopify Accounting Software Guide — how to pick and connect the right accounting system
- Shopify QuickBooks Integration — step-by-step walkthrough for connecting Shopify to QuickBooks
- Multi-Channel Inventory Accounting — COGS tracking, channel-level P&L, and inventory valuation
- eCommerce Bookkeeping Fundamentals — chart of accounts setup and reconciliation principles
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FAQs
How does this Shopify-Dynamic 365 Business Central Integration work?
SyncTools connects to your Shopify store via the Shopify API and your Dynamics 365 Business Central environment via the D365 Business Central API. It reads every Shopify transaction — sales, fees, refunds, and taxes — and posts each to the correct D365 account automatically, without CSV exports or manual journal entries.
How long does it take to integrate and set up Shopify with Dynamic 365 Business Central? Will you help me with configuring my account or do I need to do it all by myself?
As, an Ecommerce accounting expert, the process normally takes 15 to 30 minutes to get your account syncing done. Our team will help you to configure your account and ensure that it is properly synced. You won’t need to worry about setting up your account yourself – we’ll take care of everything for you.
Please feel free to contact us at sales@synctools.ai if you have any questions or require additional support.
Do I need to take a trial with my live Dynamic 365 Business Central account or can i try this with Dynamic 365 Business Central sandbox also?
No, You don’t need to connect your live account for a trial if you don’t want. Yes, you can use the Dynamic 365 Business Central sandbox also and test the system.
Does SyncTools support COGS synchronization to Dynamic 365 Business Central?
Yes. SyncTools syncs Shopify product cost data to Dynamics 365 Business Central as COGS entries — either per order or in summarized batches. Each sale posts gross revenue to your income account and the corresponding COGS to a dedicated expense account, giving you accurate gross margin in your D365 P&L. COGS sync requires that product costs are set in Shopify before the order syncs.
Does this Shopify Dynamic 365 Business Central Integration supports summarized sales synchronization as I don’t want the individual orders to sync to Dynamic 365 Business Central?
Yes. SyncTools supports summarized sales sync to Dynamics 365 Business Central on a daily, weekly, or monthly basis — posting a single journal entry per period instead of one entry per order. Ideal for high-volume Shopify stores where individual order entries would create noise in D365. Gross sales, fees, refunds, and taxes are still mapped to separate D365 accounts in summarized mode.
What are the entities I can synchronize from Shopify with the help of SyncTools?
You can synchronize customers, products, billing and shipping addresses, and sales orders as an invoice with sales order line items SKU, price, description, tax rate, discount, etc…, classes, refunds as credit memo or refund receipt, customer payment as payment, purchase orders as purchase order or bill in Dynamic 365 Business Central.
What about historical data? Can you sync that too?
Yes, historical data can be synced with additional cost under the STANDARD & PLUS plan.
Is my financial data secure with the integration?
Yes, This Shopify Dynamic 365 Business Central connector uses secure and encrypted data transfer protocols to ensure the safety and security of your financial data.
What happens to my customer data? Will it be safe with your system? How do you ensure the safety and confidentiality of my customer data while it's being synced between Shopify and Dynamic 365 Business Central?
We take the security and privacy of your customer data seriously. Our system securely transfers data between Shopify and Dynamic 365 Business Central without storing any of your data on our servers. We redact personally identifiable information to further protect your customer’s privacy. You can trust that your customer data is safe with us.
Ready to automate your accounting sync?
30-day free trial. No credit card required. All features included.